Create fit plot — fit_plot • shinyMixR

Creates a fit plot either using the xpose.nlmixr package or using a default ggplot call

fit_plot(
  dfrm,
  type = "xpose",
  by = "ID",
  idv = "TIME",
  obs = "DV",
  pred = "PRED",
  ipred = "IPRED",
  grp = "ID",
  logy = TRUE,
  scales = "fixed",
  mdlnm = NULL,
  outnm = NULL,
  projloc = ".",
  ...
)

Arguments

dfrm: data frame as created by the nlmixr function
type: character defining the type of plot that should be created. currently "xpose" and "user" are supported for xpose or ggplot style of plots
by: character vector with variables for facetting
idv: independent variable or x variable
obs: variable with observed data points
pred: variable with predicted data points
ipred: variable with individual predicted data points
grp: variable for grouping (mainly to draw separate lines)
logy: logical if y-axis should be displayed on log scale
scales: character of length one defining the scale parameter of ggplot (e.g. "fixed", "free","free_y",etc)
mdlnm: character with name of the model
outnm: character with name of the output file (see details)
projloc: character with the base location of the shinyMixR project
...: additional arguments passed to ltx_plot or html_plot

Value

in case no outnm is defined a ggplot object will be returned otherwise the results are saved to disk

Details

In case a model is saved, a directory with the name of the model is created within the analysis folder of the current project. Then within this folder the file is saved as outnm. This method was chosen so the interface can easily index applicable files for a certain model. However, this means that output is alwasy saved in this directly regardless of the location of outnm

Author

Richard Hooijmaijers

Examples


if (FALSE) {
 fit_plot(res)
}