Create fit plot

Creates a fit plot either using the xpose.nlmixr package or using a default ggplot call

Usage

fit_plot(
  dfrm,
  type = "xpose",
  by = "ID",
  idv = "TIME",
  obs = "DV",
  pred = "PRED",
  ipred = "IPRED",
  grp = "ID",
  logy = TRUE,
  scales = "fixed",
  mdlnm = NULL,
  outnm = NULL,
  projloc = ".",
  ...
)

Arguments

dfrm

data frame as created by the nlmixr function

type

character defining the type of plot that should be created. currently "xpose" and "user" are supported for xpose or ggplot style of plots

by

character vector with variables for facetting

idv

independent variable or x variable

obs

variable with observed data points

pred

variable with predicted data points

ipred

variable with individual predicted data points

grp

variable for grouping (mainly to draw separate lines)

logy

logical if y-axis should be displayed on log scale

scales

character of length one defining the scale parameter of ggplot (e.g. "fixed", "free","free_y",etc)

mdlnm

character with name of the model

outnm

character with name of the output file (see details)

projloc

character with the base location of the shinyMixR project

...

additional arguments passed to ltx_plot or html_plot

Value

in case no outnm is defined a ggplot object will be returned otherwise the results are saved to disk

Details

In case a model is saved, a directory with the name of the model is created within the analysis folder of the current project. Then within this folder the file is saved as outnm. This method was chosen so the interface can easily index applicable files for a certain model. However, this means that output is alwasy saved in this directly regardless of the location of outnm

Author

Richard Hooijmaijers

Examples

if (FALSE) { # \dontrun{
 fit_plot(res)
} # }